Cut into a healthy part of the cactus plant to treat stem rot. Symptoms of stem root include yellow spots on stems and brown fungal growth. Make your cut 1/2 an inch into healthy cactus tissue. Apply a powdered fungicide to the cut section that contains ethyl mercaptan.
Spray the cactus plant with a fungicide that contains copper to control anthracnose. Cacti that are infected with anthracnose display symptoms such as areas of light-brown plant tissue with pink pustules or fungi growing on the surface. Repeat applications according to the directions.
Dig the cactus carefully out of the soil to examine for root rot. Prune off areas of root rot with a pair of bypass shears. Root rot causes roots to turn black and mushy. Repot the cactus in a sterilized cactus potting medium.
Spread a 1- to 2-inch layer of gravel over the surface of the cactus soil. This will help keep fungal spores from spreading to the rest of the plant during treatment, and it will also serve as a prevention method.
Remove and destroy cactus plants that have contracted dry rot, sunscald or cotton root rot. Signs of dry rot include black circular spots. Sunscald causes cactus plants to produce reddish-brown spots. You can identify cotton root rot by digging the cactus out of the soil and looking for brown strands of fungi.