Put on a pair of thick fabric or leather gloves before handling the branches of a Japanese quince. Thorns line the branches and the dense matrix of branches often tangles. Consider wearing long sleeves, too, to prevent punctures or scrapes on your forearms.
Cut back flowering branches with hand pruners in late spring after the blooming season ends. Reduce the branch tips that recently flowered by 4 to 10 inches, making the pruning cut 1/4 inch above a lower leaf, branch junction or dormant bud.
Remove one-fifth to one-third of the oldest branches on older, established Japanese quince shrubs. Prune these branches back to their bases, leaving 3- to 5-inch stubs. Cut out these branches evenly across the entire shrub. New growth occurs during summer and rejuvenates the shrub.
Cut back another one-fifth to one-third of the oldest remaining branches the next year, to continually grow new branches that will produce more flowers the following spring.