Mix the thinset mortar with water in a mixing container until it has reached the consistency of peanut butter.
Scrape the surface of the mortar to create a bead of mortar along the length of the trowel's blade that is approximately 1/8 of an inch in diameter.
Press the bead of mortar into the crack or seam with the bead's length running parallel to the crack or seam. This will form a strong backing for the upper coat of mortar, and will help prevent air bubbles from becoming trapped in the crack.
Scoop more mortar onto the trowel this time, and apply it to the crack over the top of the bead you applied previously.
Scrape the excess mortar off the concrete board using the edge of the trowel.