Transfer your plant to a temporary holding bucket.
Wash the hydroponic bucket out. Clean out any residual leaves, roots or dirt. Let the bucket dry completely.
Paint the inside of the pot with a paint containing copper hydroxide. Copper hydroxide prevents the roots from attaching to the sides of the pot and wrapping around it, girdling themselves. Garden and hydroponics stores carry paint for plants for edible consumption.
Trim the plant itself. Larger plants require larger root systems. Prune dead leaves, stunted branches and suckers that will require water and nutrients.